Streamlined Simulation of Circadian Gene Networks

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Documentation for package ‘clockSim’ version 0.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.compute_validatePair	Trajectory similarity: validate consistency of result matrix pair
clockSim	clockSim: Streamlined Simulation of Circadian Gene Networks
compute_cosine	Trajectory similarity: Cosine Similarity
compute_normalize	Trajectory similarity: variable normalization
compute_period	Compute periodicity of time series
compute_rmse	Trajectory similarity: Root Mean Squared Error RMSE
getOdinGen	Get all clock model Odin generator objects
grid_scan	Running model on a grid of parameters/initial states
plot_phase	2-D phase potrait plot
plot_timeSeries	Time series plot (multifaceted)
run_eta	Run time estimate for an Odin model run.