Tools for Outbreak Investigation/Infectious Disease Surveillance
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Documentation for package ‘ggsurveillance’ version 0.3.0
Help Pages
| align_and_bin_dates_seasonal | Align dates for seasonal comparison |
| align_dates_seasonal | Align dates for seasonal comparison |
| create_agegroups | Create Age Groups from Numeric Values |
| expand_counts | Duplicate rows according to a weighting variable |
| geometric_mean | Compute a Geometric Mean |
| geom_epicurve | Create an epidemic curve plot or bin/count observations by date periods |
| geom_epigantt | Epi Gantt Chart: Visualize Epidemiological Time Intervals |
| geom_hline_year | Automatically create lines at the turn of every year |
| geom_vline_year | Automatically create lines at the turn of every year |
| influenza_germany | Germany Influenza (FLU) Surveillance data |
| linelist_hospital_outbreak | Line list of a fictional hospital outbreak (Data) |
| scale_x_cases_5er | Continuous x-axis and y-axis scale for (case) counts |
| scale_x_discrete_reverse | Reversed discrete scale for 'ggplot2' |
| scale_y_cases_5er | Continuous x-axis and y-axis scale for (case) counts |
| scale_y_discrete_reverse | Reversed discrete scale for 'ggplot2' |
| StatBinDate | Create an epidemic curve plot or bin/count observations by date periods |
| StatDateCount | Create an epidemic curve plot or bin/count observations by date periods |
| StatEpicurve | Create an epidemic curve plot or bin/count observations by date periods |
| stat_bin_date | Create an epidemic curve plot or bin/count observations by date periods |
| stat_date_count | Create an epidemic curve plot or bin/count observations by date periods |
| theme_mod_disable_legend | Quickly adjust the legend position |
| theme_mod_disable_legend, theme_mod_legend_position | Quickly adjust the legend position |
| theme_mod_legend_bottom | Quickly adjust the legend position |
| theme_mod_legend_left | Quickly adjust the legend position |
| theme_mod_legend_position | Quickly adjust the legend position |
| theme_mod_legend_right | Quickly adjust the legend position |
| theme_mod_legend_top | Quickly adjust the legend position |
| theme_mod_remove_minor_grid | Quickly remove the minor lines of the panel grid |
| theme_mod_remove_minor_grid_x | Quickly remove the minor lines of the panel grid |
| theme_mod_remove_minor_grid_y | Quickly remove the minor lines of the panel grid |
| theme_mod_remove_panel_grid | Quickly remove the minor lines of the panel grid |
| theme_mod_rotate_axis_labels | Rotate axis labels |
| theme_mod_rotate_x_axis_labels | Rotate axis labels |
| theme_mod_rotate_x_axis_labels_30 | Rotate axis labels |
| theme_mod_rotate_x_axis_labels_45 | Rotate axis labels |
| theme_mod_rotate_x_axis_labels_60 | Rotate axis labels |
| theme_mod_rotate_x_axis_labels_90 | Rotate axis labels |
| theme_mod_rotate_y_axis_labels | Rotate axis labels |
| uncount | Duplicate rows according to a weighting variable |
| uncount, expand_counts | Duplicate rows according to a weighting variable |